Instructors: | Terry Hwa; Urey 7222; phone: 4-7263; e-mail: Karen Oegema; CMM/E 3051; phone: 4-9714; e-mail: |
Time/Location: | Friday 3 – 5pm; Urey Hall 6120 |
Course URL: | this page; https://matisse.ucsd.edu/courses/s19-qbio-critical-reading |
Prerequisite: | interest in quantitative biology; consent of instructor |
Course activity:
Date | class activity | assignment | |
W1 | Fri, Apr 5 |
Intro to data-driven approach to modeling 3D cell migration by Stephanie Fraley | read ms #1 on neutrophil polarization by Ku et al (Cell, 2012). |
W2 | Fri, Apr 12 |
discuss ms #1 with Stephanie | |
W3 | Fri, Apr 19 |
“Impact of Cardiac function on Cardiac Morphogenesis” by Debbie Yelon (ppt) |
read ms #2 on heart valve development by Heckel et al (Curr Biol, 2015). |
W4 | Fri, Apr 26 |
discuss ms #2 with Debbie | |
W5 | Fri, May 3 |
Intro to gut function by Amir Zarrinpar Supp reading: Review on gut microbiome |
read ms #3 on the difficulty of using micro biome as a diagnostic agent by He et al (Nat Medicine, 2018). |
W6 | Fri, May 10 |
Intro to the gut microbiome discuss ms #3 with Amir |
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W7 | Fri, May 17 |
Intro to cheese microbial community by Rachel Dutton | read ms #4: genetic requirement for microbial interactions in communities; Morin et al (eLife, 2018). |
W8 | Fri, May 24 |
discuss ms #4 with Rachel | |
W9 | Fri, May 31 |
no class — prepare for group presentation | |
W10 | Fri, June 7 |
group presentation |